Two-color particle image velocimetry technique for an internal combustion engine

A two-color particle image velocimetry (PIV) technique has been applied to a single-cylinder motored research engine. Two-color PIV is a quantitative planar velocity measurement technique that can unambiguously determine the velocity magnitude and direction.

The work includes the development of an interrogation system, a series of computer simulations to determine the performance of the technique under various conditions, the comparison of these results to similar ones obtained for an autocorrelation PIV system, and a test of the technique by reconstructing the velocity field of a uniform jet flow.

The technique was then applied to the in-cylinder flow field of a motored single-cylinder, cup-in-head, research engine. A total of 27 instantaneous velocity fields were obtained at a single measurement plane for a single operating condition of the engine. The data were analyzed to yield ensemble-averaged velocity and velocity fluctuation.     

Water‐Splitting Electrocatalysis in Acid Conditions Using Ruthenate‐Iridate Pyrochlores

The pyrochlore solid solution (Na_0.33Ce_0.67)₂(Ir_1?xRu_x)₂O₇ (0≤x≤1), containing B‐site Ru^IV and Ir^IV is prepared by hydrothermal synthesis and used as a catalyst layer for electrochemical oxygen evolution from water at pH<7. The materials have atomically mixed Ru and Ir and their nanocrystalline form allows effective fabrication of electrode coatings with improved charge densities over a typical (Ru,Ir)O₂ catalyst. An in situ study of the catalyst layers using XANES spectroscopy at the Ir L_III and Ru K edges shows that both Ru and Ir participate in redox chemistry at oxygen evolution conditions and that Ru is more active than Ir, being oxidized by almost one oxidation state at maximum applied potential, with no evidence for ruthenate or iridate in +6 or higher oxidation states.     

Evidence of Noncentrosymmetry of Human Tooth Hydroxyapatite Crystals

Herein, we investigate human single hydroxyapatite crystals (enamel and dentine) by convergent‐beam electron diffraction (CBED) and automated electron‐diffraction tomography (ADT). The CBED pattern shows the absence of the mirror plane perpendicular to the c axis leading to the P6₃ space group instead of the P6₃/m space group considered for larger‐scale crystals, this is confirmed by ADT. This experimental evidence is of prime importance for understanding the morphogenesis and the architectural organization of calcified tissues.     

Exhaustive docking and solvated interaction energy scoring: lessons learned from the SAMPL4 challenge

We continued prospective assessments of the Wilma–solvated interaction energy (SIE) platform for pose prediction, binding affinity prediction, and virtual screening on the challenging SAMPL4 data sets including the HIV-integrase inhibitor and two host–guest systems. New features of the docking algorithm and scoring function are tested here prospectively for the first time. Wilma–SIE provides good correlations with actual binding affinities over a wide range of binding affinities that includes strong binders as in the case of SAMPL4 host–guest systems. Absolute binding affinities are also reproduced with appropriate training of the scoring function on available data sets or from comparative estimation of the change in target’s vibrational entropy. Even when binding modes are known, SIE predictions lack correlation with experimental affinities within dynamic ranges below 2 kcal/mol as in the case of HIV-integrase ligands, but they correctly signaled the narrowness of the dynamic range. Using a common protein structure for all ligands can reduce the noise, while incorporating a more sophisticated solvation treatment improves absolute predictions. The HIV-integrase virtual screening data set consists of promiscuous weak binders with relatively high flexibility and thus it falls outside of the applicability domain of the Wilma–SIE docking platform. Despite these difficulties, unbiased docking around three known binding sites of the enzyme resulted in over a third of ligands being docked within 2 Å from their actual poses and over half of the ligands docked in the correct site, leading to better-than-random virtual screening results.